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Senior Principal Scientist, AI/ML Antibody Design & Engineering

Regeneron
Full-time
Remote friendly (Tarrytown, NY)
United States
IT

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Role Summary

Senior Principal Scientist specializing in AI/ML to lead the design and engineering of next-generation antibody-based protein therapies. Focus on computational biology, programming, large language models, in silico protein design tools, structural biology and antibody engineering. Drive internal development and external partnerships to create/validate AI/ML tools for next-gen antibody therapies. Collaborate with antibody engineers, structural biologists and AI/ML scientists to shape AI/ML strategy and deliver future biotherapies from state-of-the-art facilities.

Responsibilities

  • Utilize AI and machine learning techniques to design novel antibodies and bi/multi-specific antibodies that would be challenging to achieve from screening
  • Develop novel AI and ML tools to enable de novo antibody discovery with unique properties and in silico co-optimization of affinity, expression, stability and PK/half-life
  • Apply deep learning and generative AI techniques to train/enhance LLM or other relevant language models using internal datasets
  • Use in silico protein/antibody engineering design tools such as Rosetta for structure-based design and engineering
  • Leverage deep target biology from broad therapeutic areas to enable desired novel MoAs through molecular design
  • Collaborate and support scientists from antibody engineering, therapeutic areas and other tech centers with biotherapeutic design
  • Guide and lead AI/ML scientists across multiple functions to have a synergized AI/ML strategy and drive sustained delivery of novel molecular entities to pipeline
  • Serve as an expert in computational biologic design to keep up with advancements in AI, ML, and protein engineering
  • Maintain data analysis and records in well-organized fashion
  • Present data clearly to teams and management

Qualifications

  • PhD in Computational Biology, Bioinformatics, Computer Science, Structural Biology or related field
  • 7–10 years of relevant experience
  • Strong track record of innovation and research accomplishments in developing AI/ML methods and using deep learning tools to solve antibody/protein engineering challenges
  • Experience with structural modeling and design tools (e.g., Rosetta) strongly preferred
  • Experience constructing DNA and protein production for screening in silico design preferred
  • Proficiency in programming languages such as Python, R and C++
  • Ability to work with large datasets and cloud computing infrastructure
  • Strong organizational, time-management, and presentation skills

Skills

  • Advanced machine learning models related to antibody engineering (language models, geometric deep learning, generative models, multi-modal models)
  • Cross-disciplinary collaboration in cross-functional teams
  • Data analysis, visualization and clear scientific communication

Education

  • PhD in Computational Biology, Bioinformatics, Computer Science, Structural Biology or related field
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